Console version
- Over 40 villains to trap
- Traps to buy in order to capture the villains
- Traptanium Portal of Power
- Villain interaction (Wii-U exclusive)
3DS version
- Less than 20 villains (currently)
- No traps needed
- Interact with captured villains by tickling, poking and spinning them in their Traptanium prison
- Multiplayer Wi-Fi connection playing Skystones
- Normal Portal of Power
- Different storyline